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Publications

Table of Contents

Working papers #

  1. Lap Sum Chan, Mykhaylo M. Malakhov, and Wei Pan. “Identifying shared and distinct causes of multiple related traits: A robust multi-response Mendelian randomization framework for highly correlated exposures.” In preparation.
  2. Mykhaylo M. Malakhov and Wei Pan. “Co-expression-wide association studies implicate protein–protein interactions in complex disease risk.” Submitted to Nature Communications.
    [medRxiv] | [GitHub] | doi: 10.1101/2024.10.02.24314813
  3. Ruoyu He, Jingchen Ren, Mykhaylo M. Malakhov, and Wei Pan. “Enhancing nonlinear transcriptome- and proteome-wide association studies via trait imputation with applications to Alzheimer’s disease.” In revision at PLOS Genetics.

Journal articles #

  1. Mykhaylo M. Malakhov, Ben Dai, Xiaotong T. Shen, and Wei Pan. “A bootstrap model comparison test for identifying genes with context-specific patterns of genetic regulation.” The Annals of Applied Statistics, 18(3):1840-1857, Sep 2024.
    [AOAS] | [bioRxiv] | [GitHub] | doi: 10.1214/23-AOAS1859
  2. Lap Sum Chan, Mykhaylo M. Malakhov, and Wei Pan. “A novel multivariable Mendelian randomization framework to disentangle highly correlated exposures with application to metabolomics.” The American Journal of Human Genetics, 111(9):1834-1847, Sep 2024.
    [AJHG] | [GitHub] | doi: 10.1016/j.ajhg.2024.07.007
  3. Zhaotong Lin, Haoran Xue, Mykhaylo M. Malakhov, Katherine A. Knutson, and Wei Pan. “Accounting for nonlinear effects of gene expression identifies additional associated genes in transcriptome-wide association studies.” Human Molecular Genetics, 31(14):2462–2470, July 2022.
    [HMG] | [GitHub] | doi: 10.1093/hmg/ddac015
  4. Julie C. Blackwood, Mykhaylo M. Malakhov, Junyan Duan, Jordan J. Pellett, Ishan S. Phadke, Suzanne Lenhart, Charles Sims, and Katriona Shea. “Governance structure affects transboundary disease management under alternative objectives.” BMC Public Health, 21:1782, Oct 2021.
    [BMCPH] | doi: 10.1186/s12889-021-11797-3
  5. Junyan Duan, Mykhaylo M. Malakhov, Jordan J. Pellett, Ishan S. Phadke, Jackson Barber, and Julie C. Blackwood. “Management efficacy in a metapopulation model of white-nose syndrome.” Natural Resource Modeling, 34(3):e12304, Aug 2021.
    [NRM] | [GitHub] | doi: 10.1111/nrm.12304

Reports and theses #

  1. Mykhaylo M. Malakhov, Brianna R. Fitzpatrick, Rebecca A. Lopez, and Abhishek Shivkumar. Attractor Reconstruction and Empirical Parameter Inference for Hydrogen-Oxygen Chemistry. Technical Report AD1098889, Air Force Research Laboratory, Aug 2019.
    [DTIC]
  2. Mykhaylo M. Malakhov. Managing White-nose Syndrome in Bats: A Spatially Dynamic Modelling Approach. Honors Thesis, Andrews University, Apr 2019.
    [JWL] | doi: 10.32597/honors/216